Hi,
i can not see the pial surface using tksurfer. i´m using Fedora core 7, 64 bits, with version: freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.3-full.tar.gzftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.3-full.tar.gz, with nvidia card.
when i enter: ldd /usr/local/freesurfer/bin/tksurfer.bin i get: linux-vdso.so.1 => (0x00007fff463fd000) libtix8.1.8.4.so => not found libtk8.4.so => /usr/lib64/libtk8.4.so (0x0000003678a00000) libtcl8.4.so => /usr/lib64/libtcl8.4.so (0x0000003678600000) libGLU.so.1 => /usr/lib64/libGLU.so.1 (0x00002aaaaaaca000) libXmu.so.6 => /usr/lib64/libXmu.so.6 (0x0000003c35600000) libGL.so.1 => /usr/lib64/libGL.so.1 (0x0000003c2d200000) libXext.so.6 => /usr/lib64/libXext.so.6 (0x0000003c28400000) libX11.so.6 => /usr/lib64/libX11.so.6 (0x0000003c27c00000) libexpat.so.0 => /lib64/libexpat.so.0 (0x0000003c28800000) libjpeg.so.62 => /usr/lib64/libjpeg.so.62 (0x0000003c2f200000) libtiff.so.3 => /usr/lib64/libtiff.so.3 (0x000000367e800000) libz.so.1 => /lib64/libz.so.1 (0x0000003c26400000) libcrypt.so.1 => /lib64/libcrypt.so.1 (0x0000003c38200000) libdl.so.2 => /lib64/libdl.so.2 (0x0000003c26000000) libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003c26c00000) libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x0000003ed0a00000) libm.so.6 => /lib64/libm.so.6 (0x0000003ed0e00000) libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003c33200000) libc.so.6 => /lib64/libc.so.6 (0x0000003c25800000) libXt.so.6 => /usr/lib64/libXt.so.6 (0x0000003c38e00000) libXxf86vm.so.1 => /usr/lib64/libXxf86vm.so.1 (0x0000003c3ae00000) libdrm.so.2 => /usr/lib64/libdrm.so.2 (0x0000003c2d600000) libXau.so.6 => /usr/lib64/libXau.so.6 (0x0000003c27400000) libXdmcp.so.6 => /usr/lib64/libXdmcp.so.6 (0x0000003c27000000) /lib64/ld-linux-x86-64.so.2 (0x0000003c25400000) libSM.so.6 => /usr/lib64/libSM.so.6 (0x0000003c2fa00000) libICE.so.6 => /usr/lib64/libICE.so.6 (0x0000003c30200000)
starting tksurfer: [neuro@fedoraneuro subjects]$ tksurfer bert rh pial gives: surfer: current subjects dir: /usr/local/freesurfer/subjects surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /usr/local/freesurfer/subjects surfer: Reading header info from /usr/local/freesurfer/subjects/bert/mri/T1.mgz surfer: vertices=131277, faces=262550 Loading /usr/local/freesurfer/surface_labels.txt surfer: ### redraw failed: no gl window open surfer: single buffered window surfer: using interface /usr/local/freesurfer/lib/tcl/tksurfer.tcl Reading /usr/local/freesurfer/lib/tcl/tkm_common.tcl Reading /usr/local/freesurfer/lib/tcl/tkm_wrappers.tcl Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl Reading /usr/local/freesurfer/lib/tcl/tkUtils.tcl Successfully parsed tksurfer.tcl reading white matter vertex locations...
can you help?
thanks! -joost
On Fri, Apr 25, 2008 at 4:05 PM, Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
If you have an Nvidia graphics card, you will need to update the driver.
Try running nvidia-installer --update, as root (preferably have your sysadmin do this).
Nick
On Fri, 2008-04-25 at 21:25 +0800, yczhang wrote:
Hi, when I launched the command tksurfer to see the constructed pial surface, only a very small part of the surface can been seen in the window. I do not know how to fix the problem. Thanks!
yczhang 2008-04-25 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer