Re: [Freesurfer] How to convert a surface label to .nii

yep, that's right. Thanks Marc!

On 02/11/2016 09:44 AM, Marc Ramos wrote:

My guess is to use mri_label2vol https://surfer.nmr.mgh.harvard.edu/fswiki/mri_label2vol instead, and a mri_convert to convert to nii.gz

I hope this helps. Marc.

On Thu, Feb 11, 2016 at 3:17 PM, Afzal, Afsana <AAFZAL@mgh.harvard.edu mailto:AAFZAL@mgh.harvard.edu> wrote:

Hi,

How can I convert a surface .label file to a .nii format? I'm
using mri_label2label in the following way but the output is
always in .label not .nii:

mri_label2label
    --srclabel dlpfc-lh.label
    --outmask dlpfc-lh_mask.nii
    --s fsaverage
    --trglabel dlpfc-lh_mask.nii
    --regmethod surface
    --hemi lh

Thanks for your help,

Afsana

______________________________
*Afsana Afzal*
Clinical Research Coordinator
Massachusetts General Hospital
Division of Neurotherapeutics
Department of Psychiatry: Neurosciences
149 13th St, Room 2612
Charlestown, MA 02129
Phone: 617-643-5129 <tel:617-643-5129>
Fax: 617-726-4078 <tel:617-726-4078>

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