External Email - Use Caution
Hi Bruce,
Yes, I noticed that I did not include the extension by error.
Sorry for this childish error.
Kind regards, Rosie
On Mon, Jun 21, 2021 at 5:06 PM Fischl, Bruce BFISCHL@mgh.harvard.edu wrote:
Hi Rosalia
Does /home/rosalia/Desktop/ARTICO/sub-001_ses-BSL_T1w exist? Shouldn’t it have an extension like .nii.gz or .mgz?
Cheers
Bruce
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *Rosalia Dacosta Aguayo *Sent:* Monday, June 21, 2021 10:49 AM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] Problem to run recon-all in one subject
External Email - Use Caution *Dear Freesurfer's experts
I am trying to run recon-all -all in a subject and it seems there is a problem I do not know how to solve.
rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ recon-all -s sub-001_ses-BSL -i /home/rosalia/Desktop/ARTICO/sub-001_ses-BSL_T1w -T2 /home/rosalia/Desktop/ARTICO/sub-001_ses-BSL_T1w -T2pial -all *ERROR: cannot find /home/rosalia/Desktop/ARTICO/sub-001_ses-BSL_T1w* Linux rosalia-Lenovo-Y520-15IKBN 4.10.0-40-generic #44~16.04.1-Ubuntu SMP Thu Nov 9 15:37:44 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s sub-001_ses-BSL exited with ERRORS at Mon 21 Jun 16:45:13 CEST 2021
For more details, see the log file *(there is no log file created)* To report a problem, see *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://secure-web.cisco.com/1pEj9YnuP2joq_1NtsFWTduQuuLtMTx5V5wyms4VajLLV1VK... http://secure-web.cisco.com/1fl8R1eHZCuzU6FCHJEl-s4FAaPFJk5v8HULKxGhhH_IJIsARqvi_8ax2RUjFc8s-_n3e2QIM4j_u3OblOnyKy_FBZpW6j9ACXnftYLjq-Q8-yFdoaQEzTa_XWjvxO_GR0SlhaxNDLUcEwfR9Nh1DQ1dv5eKkTlJqZc8WYOQLxTRIF181QNN89uOty1MTFJ-viI9cFystqaf-GJkIgGiOnggNNi5JXT4BhS9hLC0fUV_xcu2HBdFAcQkXuy3xw5z5XMik90hv2FYMY8SaNgnpqg/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting
rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ cd ARTICO *rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO $ ls* fsaverage sub-001_ses-BSL_T2w.nii sub-003_ses-BSL_T1w.nii sub-001_ses-BSL_T1w.nii sub-003_ses-BSL sub-003_ses-BSL_T2w.nii rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO $
Any idea would be very appreciated.
Kind regards,
Rosie
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