try
mri_glmfit-sim --glmdir GLM --no-sim perm.abs.2
doug
On 06/05/2013 02:26 PM, Glen Lee wrote:
On Wed, Jun 5, 2013 at 12:12 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
what was your original mri_glmfit-sim command? mri_glmfit-sim --glmdir GLM --sim perm 20000 2 perm.abs.2 --sim-sign abs --overwrite Then, I tried no-sim on the generated csd file with the following command: mri_glmfit-sim --cwpvalthresh 0.99 --glmdir GLM --no-sim --overwrite /csd/perm.abs.2.j001-osgm.csd