The problem is that your input has multiple frames. What is the nature of the input? Is it a multi-echo MPRAGE?
On 2/4/14 12:18 AM, Saurabh Thakur wrote:
Hello Everyone,
I am getting error
/////===================================================/// saurabh@saurabh-Dell-System-XPS-L502X:/usr/local/freesurfer$ recon-all -s bert -all -hippo-subfields
WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!
INFO*: FreeSurfer build stamps do not match* *Subject Stamp: freesurfer-Linux-centos4_x86_64-stable-v5.2.0-20130111 Current Stamp: freesurfer-Linux-centos4-stable-pub-v5.2.0* INFO: SUBJECTS_DIR is /home/saurabh/Desktop/saurabh_freesurfer Actual FREESURFER_HOME /usr/local/freesurfer -rw-r--r-- 1 saurabh saurabh 423023 Jan 16 2013 /home/saurabh/Desktop/saurabh_freesurfer/bert/scripts/recon-all.log Linux saurabh-Dell-System-XPS-L502X 3.5.0-36-generic #57~precise1-Ubuntu SMP Thu Jun 20 18:21:09 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer Previous: /space/freesurfer/centos4.0_x86_64/stable #-------------------------------------------- #@# MotionCor Tue Feb 4 10:44:53 IST 2014 Found 3 runs /home/saurabh/Desktop/saurabh_freesurfer/bert/mri/orig/001.mgz /home/saurabh/Desktop/saurabh_freesurfer/bert/mri/orig/002.mgz /home/saurabh/Desktop/saurabh_freesurfer/bert/mri/orig/003.mgz Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames! /home/saurabh/Desktop/saurabh_freesurfer/bert/mri/orig/001.mgz has frames Linux saurabh-Dell-System-XPS-L502X 3.5.0-36-generic #57~precise1-Ubuntu SMP Thu Jun 20 18:21:09 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s bert exited with ERRORS at Tue Feb 4 10:44:54 IST 2014 //---------------------------------------------------------------------------------------------------------------------//
I am looking for solution asap.
Thanks in advance.
Saurabh Thakur,
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer