Not sure what you mean as the pial files are surfaces not labels or annotations. If you want to extract labels from the annotations you can use mri_annotation2label
On 2/11/2021 12:55 PM, Krieger, Donald N. wrote:
External Email - Use Caution
Dear freesurfer group,
I wish to measure a cortical thickness value for each entry in a label file, e.g. SubNo/wmparc/ctx-lh-lateraloccipital_1011.label .
Is there a function in the freesurfer distribution which includes this capability?
Also, is there a function in the distribution that produces regional label files from the surf/[lr]h.pial files?
Thanks - Don
Don Krieger, Ph.D.
Research Scientist
Department of Neurological Surgery
University of Pittsburgh
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
