Hi Venkat, In your second recon-all command, the -notal-check flag should appear after the -autorecon1 flag instead of before. Should look like this:
recon-all -autorecon1 -notal-check -subjid nonhyper_44
The talairach check output seems peculiar though (p=0.0000), so you may want to take a look at the talairach registration using tkregister2. -Louis
On Wed, 15 Aug 2012, Rajagopalan, Venkateswaran wrote:
Hi All,
When I ran recon-all -autorecon1 inĀ one of my subject I encountered the following error
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string.
so I ran the command as follows recon-all -notal-check -autorecon1 -subjid nonhyper_44
still I encounter the above error I don't know what I am doing wrong here.
Thanks Venkat
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