Hi Venkat, In your second recon-all command, the -notal-check flag should appear after the -autorecon1 flag instead of before. Should look like this:
recon-all -autorecon1 -notal-check -subjid nonhyper_44
The talairach check output seems peculiar though (p=0.0000), so you may want to take a look at the talairach registration using tkregister2. -Louis
On Wed, 15 Aug 2012, Rajagopalan, Venkateswaran wrote:
Hi All,
When I ran recon-all -autorecon1 in one of my subject I encountered the following error
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string.
so I ran the command as follows recon-all -notal-check -autorecon1 -subjid nonhyper_44
still I encounter the above error I don't know what I am doing wrong here.
Thanks Venkat
===================================
Please consider the environment before printing this e-mail
Cleveland Clinic is ranked one of the top hospitals in America by U.S.News & World Report (2010). Visit us online at http://www.clevelandclinic.org for a complete listing of our services, staff and locations. Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you.