Hi,
We found a bug in the mri_cvs_register script after the release. Please, download the new version of applyMorph and mri_cvs_register from one of the below links for Linux Centos4, Linux Centos4 x86 64 and Mac Leopard respectively:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos4 ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos4_x86_64 ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/mac-leopard-intel
--Lilla