26 Nov
2018
26 Nov
'18
1:10 p.m.
External Email - Use Caution
Dear FS experts,
I was wondering if it is possible to run recon-all (e.g. autorecon2, autorecon3) on skull-stripped images which have gone through N4 correction.
Would it be okay to run?
recon-all -i sub1.nii.gz -subjid s1 -autorecon1 -sd . -noskullstrip
I saw the work around for already skull-stripped images, but I wasn't sure if this would be appropriate for images which have also been corrected by N4. Or is there another way I should approach this?
Thank you for the help in advance!
Kind regards, Katie