Hi Freesurfers,
Could you help me interpret this error message? I am attempting to run TRACULA using version 6 on a MacBook Pro OS X El Capitan Version 10.11.3
helpdesks-MacBook-Pro-2:R01_DTI crc$ trac-all -prep -c dmrirc.example1
INFO: SUBJECTS_DIR is /Users/crc/Documents/myprojects/R01_DTI
INFO: Diffusion root is /Users/CRC/Documents/myprojects/R01_DTI/tracresults
Actual FREESURFER_HOME /Applications/freesurfer
trac-preproc -c /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/scripts/dmrirc.local -log /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/scripts/trac-all.log -cmd /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/scripts/trac-all.cmd
#-------------------------------------
/Applications/freesurfer/bin/trac-preproc
#-------------------------------------
#@# Image corrections Fri Jul 21 09:28:12 EDT 2017
mri_convert --bvec-voxel /Users/CRC/Documents/myprojects/R01_DTI/NAH001-1/DTI/nifty.nii.gz /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/dmri/dwi_orig.nii.gz
mri_convert.bin --bvec-voxel /Users/CRC/Documents/myprojects/R01_DTI/NAH001-1/DTI/nifty.nii.gz /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/dmri/dwi_orig.nii.gz
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /Users/CRC/Documents/myprojects/R01_DTI/NAH001-1/DTI/nifty.nii.gz...
TR=3222.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.997757, 0.0345085, 0.057362)
j_ras = (0.0453079, 0.978915, 0.19918)
k_ras = (0.0492791, -0.201332, 0.978283)
writing to /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/dmri/dwi_orig.nii.gz...
cp /Users/CRC/Documents/myprojects/R01_DTI/NAH001-1/DTI/bvec /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/dmri/dwi_orig.bvecs
cp /Users/CRC/Documents/myprojects/R01_DTI/NAH001-1/DTI/bval /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/dmri/dwi_orig.bvals
mv -f /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/dmri/bvecs.tmp /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/dmri/dwi_orig.bvecs
mv -f /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/dmri/bvals.tmp /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/dmri/dwi_orig.bvals
orientLAS /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/dmri/dwi_orig.nii.gz /Users/CRC/Documents/myprojects/R01_DTI/tracresults/NAH001-1/dmri/dwi_orig_las.nii.gz
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
Trace/BPT trap
ERROR: input file must be in NIfTI format
Darwin helpdesks-MacBook-Pro-2.local 15.3.0 Darwin Kernel Version 15.3.0: Thu Dec 10 18:40:58 PST 2015; root:xnu-3248.30.4~1/RELEASE_X86_64 x86_64
trac-preproc exited with ERRORS at Fri Jul 21 09:29:59 EDT 2017
helpdesks-MacBook-Pro-2:R01_DTI crc$
It says at the end that the input file needs to be in nifty format, but my input file is in nifty format. Do you guys have any idea what could be going on here. I attached my dmrirc.example file for your reference as well.
Thank you,
Marissa