[Freesurfer] counting voxels in seeds

André Schmidt

13 Nov 2015 13 Nov '15

11:45 a.m.

Dear FS experts,

Using recon-all I defined 82 regions for a probabilistic tractography analysis. To address volume differences across regions, I like to normalize the obtained streamlines by the number of voxels in each regions. Is there an easy way to count voxels within each of my 82 regions?

Thanks for your help André

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