Thanks Bruce. Yes, I want to regenerate the aseg and also use the expert option for control point. That's recon-all -autorecon2 -autorecon3 -expert -parallel -openmp 8 -bigventricles -3T time.
Best, Paul
On Thu, Sep 14, 2017 at 2:48 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
do you want it to regenerate the aseg? If not, then a). If so, then you would just run autorecon2 (instead of autorecon2-cp)
cheers Bruce
On Thu, 14 Sep 2017, miracle ozzoude wrote:
I used the expert option for control points and manually edited the
aseg.presurf.mgz. Which is the proper flag to use in other to incorporate the respective changes? a) recon-all -autorecon2-cp -autorecon2-noaseg -autorecon3 -expert -parallel -openmp 8 -bigventricles -3T -time
or
b) recon-all -autorecon2-cp -autorecon3 -expert -parallel -openmp 8 -bigventricles -3T -time
Thanks.
Best, Paul
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