Hello, If my input file of Freesurfer is the exacted brain.nii instead of T1 image T1.nii, how should I run recon-all? The brain has already been extracted and skull has been stripped by other softwares. Shall I run like the following: recon-all -noskullstrip -normneck -autorecon-all -subjid ID (or -noskull-lta) ?
Thanks.
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