Hi Xiao,
I don't have a recon-all.log file because we used a homemade script implementing freesurfer commands. I attached the corresponding output log file, is this of any help?
If not, I was thinking of using recon-all but, if I understand correctly, it provides by default a parcellation that does not differentiate the very posterior part of the superior temporal sulcus from surrounding areas. Could you tell me how to use recon-all with another parcellation, i guess the one referenced in Fischl, 04, which labels the STS including its posterior portion ?: Destrieux CE, Halgren E, Dale AM, Fischl B, Sereno MI (1998) Variability of the human brain studied on the flattened cortical surface. Soc Neurosci Abstr 24:1164.
thanks a lot goulven
On Nov 3, 2005, at 5:06 PM, Xiao Han wrote:
Hi Goulven,
There should be a recon-all.log file under the $SUBJECTS_DIR/subject/script/ directory, if you processed the data using the "recon-all" script.
The log files you attached were produced by the tools to visuallize the results, not by the programs that create the label result. Thus we couldn't tell whether anything went wrong during the processing stage from them.
-Xiao
On Thu, 3 Nov 2005, Goulven Josse wrote:
We found the same result, in the same STS region, with different versions : the latest version in january of 2005 for Mac OSX 10.3 and the latest version (installed last week) for Linux / RedHat (again, we don't find this in all subjects).
We don't have a recon-all.log file, but i attached other log files coming from a subject processed with the version installed on the Linux / RedHat version. If necessary, we could re-run a subject in order to get a recon-all.log file.
goulven
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer