Hi Amy,
is there an aseg.mgz for subject2_before? If so, copy it to aseg.auto.mgz and you should be all set. We'll need to update the tutorial subject if this is the case.
cheers, Bruce On Thu, 26 Jun 2008, Yuan Xu wrote:
Hi,
I am new for FreeSurfer, and I am learning FreeSurfer tutorial now. I did some manual edit on subject subject2_before, then I ran the command:
recon-all -autorecon2-wm -subjid subject2_before
I got error message as following:
mri_fill: could not read segmentation from aseg.auto.mgz reading segmented volume aseg.auto.mgz... ERROR: cannot find/mnt/users.q.shares/xu.HdYGoTF9TrNMuSf90eLH/Analysis/freesurfer/freetutorial/buckner_ data/tutorial_subjs/subject2_before/mri/aseg.auto.mgz No such file or directory Linux node4.biac.duke.edu 2.6.20-1.2962.fc6 #1 SMP Tue Jun 19 18:50:05 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux recon-all exited with ERRORS at Thu Jun 26 14:56:48 EDT 2008
Any thing wrong? or can I change the tutorial sample data when I learn the example?
Thanks,
Amy