Hi,
- FS version: 5.1 - system: Linux neuro3 2.6.27.41-170.2.117.fc10.x86_64 #1 SMP Thu Dec 10 10:36:29 EST 2009 x86_64 x86_64 x86_64 GNU/Linux - on-screen error output: cmdline mri_glmfit --glmdir rh_thickness_men_20fwhm_asp_vs_con_controlling_for_IQ_AGE --y rh.thickness.fwhm20.men.age.iq.mgh --fsgd FSGD_1F3L_2C.txt dods --C asp_vs_con_controlling_for_IQ_AGE.txt --surface fsaverage rh SURFACE: fsaverage rh log file is rh_thickness_men_20fwhm_asp_vs_con_controlling_for_IQ_AGE/cache.mri_glmfit-sim.log
cd /home/neuro/asperger_psychosis_study/freesurfer51/qdec/3groups/DIAGNOSE_CI_AGE /usr/local/freesurfer/bin/mri_glmfit-sim --glmdir rh_thickness_men_20fwhm_asp_vs_con_controlling_for_IQ_AGE --cache 1.3 abs
$Id: mri_glmfit-sim,v 1.36.2.1 2011/03/28 15:46:10 greve Exp $ Wed Dec 21 15:58:23 CET 2011 Linux neuro3 2.6.27.41-170.2.117.fc10.x86_64 #1 SMP Thu Dec 10 10:36:29 EST 2009 x86_64 x86_64 x86_64 GNU/Linux neuro setenv SUBJECTS_DIR /home/neuro/asperger_psychosis_study/freesurfer51 FREESURFER_HOME /usr/local/freesurfer
Original mri_glmfit command line: cmdline mri_glmfit --glmdir rh_thickness_men_20fwhm_asp_vs_con_controlling_for_IQ_AGE --y rh.thickness.fwhm20.men.age.iq.mgh --fsgd FSGD_1F3L_2C.txt dods --C asp_vs_con_controlling_for_IQ_AGE.txt --surface fsaverage rh
DoSim = 0 UseCache = 1 DoPoll = 0 DoPBSubmit = 0 DoBackground = 0 DiagCluster = 0 gd2mtx = dods fwhm = 31.421003 ERROR: cannot find /usr/local/freesurfer/average/mult-comp-cor/fsaverage/rh/cortex/fwhm31/abs/th13/mc-z.csd
rh.thickness.fwhm20.men.age.iq.mgh was created by (i've attached the pertaining preproc log file): /usr/local/freesurfer/bin/mris_preproc --out rh.thickness.fwhm20.men.age.iq.mgh --target fsaverage --hemi rh --meas thickness --fsgd FSGD_1F3L_2C.txt --fwhm 20
when i create rh.thickness.fwhm25.men.age.iq.mgh (i've attached the pertaining preproc log file) the following command: mri_glmfit-sim --glmdir rh_thickness_men_25fwhm_asp_vs_con_controlling_for_IQ_AGE --cache 1.3 abs
*does* work with output fwhm = 3.015979
what am i doing wrong? thanks, -joost