Thanks for the reply! Here is a detail of all that I did. I downloaded the RH9 version of the software to my /usr/local directory and installed it with the "tar xzvf" command. I then changed the shell to tcsh and then the rest of the output is as follows:
[root@localhost ~]# set echo=1 [root@localhost ~]# setenv FREESURFER_HOME </usr/local>/freesurfer setenv FREESURFER_HOME [root@localhost ~]# source $FREESURFER_HOME/SetUpFreeSurfer.csh source /SetUpFreeSurfer.csh /SetUpFreeSurfer.csh: No such file or directory. [root@localhost ~]#
I have followed all instructions provided on the freesurfer website.
Thanks in advance for the help, Binu.
Binu Thomas, M.S. Computer Programmer III Department of Psychiatry UT Southwestern Medical Center Phone: 214-645-2792
Nick Schmansky nicks@nmr.mgh.harvard.edu 04/26/06 11:33 AM >>>
Also, try enabling command echoing first, like this:
set echo=1 source $FREESURFER_HOME/SetUpFreeSurfer.csh
this will print-out details of the script as it runs.
On Wed, 2006-04-26 at 12:27 -0400, Bruce Fischl wrote:
Hi Binu,
can you send us the complete screen output from what you tried?
thanks, Bruce On Wed, 26 Apr 2006, Binu Thomas wrote:
Dear all, I posted a message yesterday regarding the same problem, didn't get much help, hoping to get some help today. I am running
Red
Hat Enterprise Linux 3, tried to install Freesurfer CentOS4, when I
try
to access the SetUpFreeSurfer.csh file with the "source" command, I
get
the error: File or Directory not found. I had the feeling that
CentOS4
version of FreeSurfer might not be compatible with my OS, so I tried
to
configure the RH9 version of the software and ended up with the same error. I can see that the file exists in the "freesurfer" folder. I would greatly appreciate any help.
Thanks in advance, Binu Thomas. Univ. of TX Southwestern Medical Center. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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