All,
I am interested in using mri_watershed to remove the skull from an inplane low res structural scan (not an MPRAGE). However, when I try to I get the following message followed by the program crashing.
Mode: Atlas analysis
********************************************************* The input file is P1.mgz The output file is brainmask.auto.mgz If this is incorrect, please exit with CTL-C
changing type of input volume to 8 bits/voxel... MRIchangeType: Building histogram
*************************WATERSHED************************** preflooding height equal to 25 percent Sorting... first estimation of the COG coord: x=127 y=133 z=24 r=80 first estimation of the main basin volume: 2160181 voxelsSegmentation fault (core dumped)
I am sure that I am missing some simple flag. Does anyone know a solution to this before I run off and start using BET.
Thanks, Avram