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Hi, sorry, maybe my last email got lost. Is there anything I can try to fix this problem with selxavg3-sess?
Thanks! Best Francesca
2018-04-24 20:35 GMT+03:00 Francesca Strappini <francescastrappini@gmail.com
:
Thank you for the reply! I deleted the contrasts and run this command line:
selxavg3-sess -a FF-MonkeyCassis.sm03.rh -s MonkeyCassis-FF -no-con-ok
------- matlab output -------------------- MATLAB is selecting SOFTWARE OPENGL rendering.
< M A T L A B (R) > Copyright 1984-2016 The MathWorks, Inc. R2016b (9.1.0.441655) 64-bit (glnxa64) September 7, 2016To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com.
> >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
/usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m /usr/local/freesurfer/matlab/MRIread.m
> starting fast_selxavg3b
#@# MonkeyCassis-FF ############################### /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF
$Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $
outtop = /usr/local/freesurfer/fsfast/Monkeys Extension format = nii.gz INFO: key nSliceGroups unrecognized, line 11, skipping Subscripted assignment dimension mismatch.
Error in fast_ldpar4 (line 97) par4(nthrow,1) = tonset;
Error in flac_customize (line 121) [par partype] = fast_ldpar4(parpath);
Error in fast_selxavg3b (line 129) flac0 = flac_customize(flac0);
ERROR: fast_selxavg3() failed\n
2018-04-24 20:27 GMT+03:00 Douglas Greve dgreve@mgh.harvard.edu:
Try deleting the contrasts (.mat files) and rerunning
On 4/24/18 5:48 AM, Francesca Strappini wrote:
Dear FreeSurfer experts,
I'm trying to analyze some monkey functional data. I got this error message with selxavg3-sess.
I run the following commands:
mkcontrast-sess -analysis FF-MonkeyCassis.sm03.lh -contrast ON-vs-OFF -a 1 -c 0 mkcontrast-sess -analysis FF-MonkeyCassis.sm03.rh -contrast ON-vs-OFF -a 1 -c 0 preproc-sess -surface MonkeyCassis lhrh -fwhm 3 -s MonkeyCassis-FF -fsd bold -per-session selxavg3-sess -a FF-MonkeyCassis.sm03.lh -s MonkeyCassis-FF
------- matlab output -------------------- MATLAB is selecting SOFTWARE OPENGL rendering.
< M A T L A B (R) > Copyright 1984-2016 The MathWorks, Inc. R2016b (9.1.0.441655) 64-bit (glnxa64) September 7, 2016To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com.
>> >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
/usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m /usr/local/freesurfer/matlab/MRIread.m
>> starting fast_selxavg3b
#@# MonkeyCassis-FF ############################### /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF
$Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $
outtop = /usr/local/freesurfer/fsfast/Monkeys Extension format = nii.gz INFO: key nSliceGroups unrecognized, line 11, skipping 1 ON-vs-OFF.mat Subscripted assignment dimension mismatch.
Error in fast_ldpar4 (line 97) par4(nthrow,1) = tonset;
Error in flac_customize (line 121) [par partype] = fast_ldpar4(parpath);
Error in fast_selxavg3b (line 129) flac0 = flac_customize(flac0);
ERROR: fast_selxavg3() failed\n
Thank you! Best
Francesca
-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il
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-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il