Re: [Freesurfer] changing label outlines in tksurfer

Hi Martin,

There is no option to change the thickness of the label outlines right now. I’ll explore the possibilities to add an option for that.

Best, Ruopeng

On Jul 9, 2018, at 7:21 AM, Loeffler, Martin martin.loeffler@zi-mannheim.de wrote:

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Dear Bruce,

thanks for your quick response! I managed to do most of what I wanted in freeview. My last question: Is there any possibility to increase the thickness of the label outlines? Here the new code: freeview -f ${case_dir}/surf/rh.inflated:curvature_method=binary:label=${case_dir}/extracted_label/rh.label1.label:label_color=yellow:label_outline=yes:label=${case_dir}/extracted_label/rh.label2.label:label_color=Cyan:label_outline=yes:overlay=${base_dir}/sig.nii.gz -viewport 3d

Thanks again, Martin

-----Ursprüngliche Nachricht----- Von: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Im Auftrag von Bruce Fischl Gesendet: Sonntag, 8. Juli 2018 17:49 An: Freesurfer support list Betreff: Re: [Freesurfer] changing label outlines in tksurfer

Hi Martin

can you try freeview instead? We don't support tksurfer anymore, and changing label color/outline color is trivial using freeview.

cheers Bruce

On Sun, 8 Jul 2018, Loeffler, Martin wrote:

...

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Dear experts,

I’m visualizing a 1st level sig-map together with two specific label files using tksurfer (Freesurfer version 6.0). I’ve extracted those labels before using mri_annotation2label.

I would like to change the colours of the label outlines. This is probably a very simple thing to do, but I am somehow stuck and would appreciate any help.

Here my code:

tksurfer Case01 lh inflated \

-tcl my_script.tcl \

-label-outline \

-label ${label_dir}/lh.label1.label\

-label ${label_dir}/lh.label2.label\

-o ${contrast_dir}/contrast1l/sig.nii.gz

with the .tcl file containing the following:

labl_set_color 0 0 0 255

labl_set_color 1 0 255 255

make_lateral_view

rotate_brain_x -30

redraw

Thanks for your help!

Martin

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