Hi Georgia, How much RAM memory does your computer have? Is it possible that you ran out of it? Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
On 18 Nov 2021, at 15:04, Georgia Kapizioni <geo.kapizioni@gmail.commailto:geo.kapizioni@gmail.com> wrote:
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Dear Freesurfer experts,
I am trying to run hippocampal subfields segmentation, using the command: segmentHA_T1.sh subject The analysis is running for approximately 20 mins and then the following error appears:
f this problem is reproducible, please submit a Service Request via: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://www.mathworks.com/support/contact_us/http://secure-web.cisco.com/1BR3I-eWJj4WoMclKofhZEhxAL0gJoDY1byinZeM2eZlrhY-6wGCDzRrLg5ZyAvwuUikc5Z5mjY0rp9Cp6UuQsJII1FHZCI7FuUIAPCCOWKq69uquwGrIDO36wYvxQTbSzEmQ1utX_zgMn2lW5sCeDC7BaDuIB5h-ObHNJFd0SAE2eNnLH3Kw9Hkp35TE7OHnjVgATuMsYwoCRoCxvHJN-2v54M3RuG60eV_njI9BXwqY5pI1qDnqP_vu3L4uRs92svEa85aInZjyV3tC0p2_fa2AT9L3A62Feb7RJzCuwYStmX8pUFLTGp_Pkido7CaLdgiCyapFK_P1sXCCXjlxlQ/http%3A%2F%2Fwww.mathworks.com%2Fsupport%2Fcontact_us%2F A technical support engineer might contact you with further information. Thank you for your help.** This crash report has been saved to disk as /Users/theodore/matlab_crash_dump.4118-1 ** MATLAB is exiting because of fatal error /Applications/freesurfer/7.1.1/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 33: 4118 Killed: 9 /Applications/freesurfer/7.1.1/bin/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML 6529 /Users/xxx/Downloads/xxx/qcache 0.333333333333333333333333333333333333 /Applications/freesurfer/7.1.1/average/HippoSF/atlas/AtlasMesh.gz /Applications/freesurfer/7.1.1/average/HippoSF/atlas/AtlasDump.mgz /Applications/freesurfer/7.1.1/average/HippoSF/atlas/compressionLookupTable.txt 0.05 left L-BFGS v21 '/Applications/freesurfer/7.1.1/bin/fs_run_from_mcr /Applications/freesurfer/7.1.1/bin/' 0 Darwin MacBook-Pro-Theodore.local 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 T1 hippocampal subfields exited with ERRORS at Πεμ 18 Νοε 2021 15:34:58 EET
Attached please also find the script output. I am using the 7. 1. version of FS.
Could you please help me resolve this issue? Thank you in advance, Georgia
<hippocampal-subfields-T1.log>