Hi Luke, people generally use a different SUBJECTS_DIR than the default FS folder. You can create symbolic links to subjects in the default FS folder, but recon-all will do this for you. doug
On 03/27/2013 07:53 AM, Lukas.Scheef@ukb.uni-bonn.de wrote:
Hi folks!
I would like to use a different subject dirctory (setenv SUBJECTS_DIR <full path to subject dir>). Does freesurfer still finds the folders which are located in the default subjects directory of the FS installation? Or are they simply not needed for the recon-all process ? I refer to cvs_avg35 etc. not to the test data sets.
Please excuse if this question is stupid ... but considering the processsing time ...
Many thanks in advance,
Luke
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