Hi Doug,
It created an indidual .txt file, however I think I need a .stats file so to extract all the values from all subjects in a table using aparcstats2table.
Or can I do that from several .txt?
Thank you! Andreia
Quoting Douglas N Greve greve@nmr.mgh.harvard.edu:
If mris_anatomical_stats created the correct values, what's the problem? doug
On 08/15/2013 10:05 AM, _andreia_@sapo.pt wrote:
With mris_anatomical_stats using -log a .txt was created with the correct values. I'm trying mri_segstats now but I'm not getting the .stats file...
Waiting for Nick or Doug advice now.
Thank you Bruce!
Andreia
Quoting Bruce Fischl fischl@nmr.mgh.harvard.edu:
oh, I see. mris_anatomical_stats can write to a file with -log <file name>, but Doug or Nick can probably point you at a better way to do it with mri_segstats.
cheers Bruce On Thu, 15 Aug 2013, _andreia_@sapo.pt wrote:
Hi Bruce,
The values are displayed in the terminal but how can I create a .stats file with those measures to get a table with aparcstats2table?
I did manage do create such file from ?h.cortex.label but the values do not match the ones in aparc.
Andreia
Quoting Bruce Fischl fischl@nmr.mgh.harvard.edu:
Hi Andreia
mris_anatomical_stats -l <path to ?h.cortex.label> should do the trick.
cheers Bruce On Thu, 15 Aug 2013, _andreia_@sapo.pt wrote:
How can I get the thickness and surface area values per hemisphere?
Should I use the ones from cortex.label or the ones in aparc? How can I get the aparc ones?
Thank you in advance!
Andreia
Quoting _andreia_@sapo.pt:
> Sorry, the measures are only thickness and surface area, since I can > get the volumes from aseg. > > Andreia > > > Quoting _andreia_@sapo.pt: > >> Dear list, >> >> To obtain the thickness, surface area and volume values for each >> hemisphere I ran the command line in the subjdir: >> >> mris_anatomical_stats -mgz -f ../stats/lh.cortex_white.stats >> subjid lh white >> >> And did that with the pial surface too. However, the values I get from >> the generated cortex.stats do not match the ones in aparc.stats >> >> How can I get the referred measures, which are in the aparc.stats but >> do not appear in the table when using aparcstats2table? >> >> Thank you! >> >> Andreia >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person >> to whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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