then you didn't fix it properly. Did you find the source of the defect? This is kind of an acquired skill as you have to page through a number of slices almost by definition, and sometimes need to look in different orientations. If you point us at the data (and the voxel coords of the problem) we'll take a look.
cheers, Bruce
On Mon, 22 Sep 2008 dahlia@nmr.mgh.harvard.edu wrote:
Thanks Bruce. But what happens when I've already done the manual edit, run autorecon2-wm and still see the defect?
Hi Dahlia, this usually means there was a topological defect that was fixed incorrectly. You'll need to edit the wm.mgz to remove it, then run autorecon2-wm.
cheers, Bruce On Mon, 22 Sep 2008 dahlia@nmr.mgh.harvard.edu wrote:
Hi,
What should I do when the white volume looks right (e.g. filled in where needed) but the white surface doesn't follow the boundary of the volume? I've done recon-all with autorecon2-wm and autorecon3.
Thanks! Dahlia. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer