You're command line is incomplete (it needs more than just --s). Run it with --help and/or visit the wiki page
On 3/23/2022 2:40 PM, Alice Tao wrote:
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Thank you so much for the response! Unfortunately, that is the full command line and output:
$ mri_segment_hypothalamic_subunits --s Illegal instruction: 4
*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu *Sent:* Wednesday, March 23, 2022 10:51 AM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* [EXTERNAL] Re: [Freesurfer] mri_segment_hypothalamic_subunits error: Illegal instruction 4 Dear Alice,
Can you please send us your full command line and output?
Cheers,
/E
Juan Eugenio Iglesias *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://www.jeiglesias.com https://secure-web.cisco.com/1C2KpU9odm7EO2L906_06xrO3Z-MsifcrEe-OQgSLF8HanqeZ2YQ1Kmfej6PpsyHzt6H9WR4ZFrbQetPuGDusDMFfgxozoIzXnB9Hb-J1E5Z_jL6Qz-e-SIjhhfIdWEw27cKlCeQBOZm0KjTNHczrCqDpz0V5hJwoNJ_85u7r3sv34VBBcu654NfJ39nXnPJfUrOlcL6ScW_-DckHTdgc4Jnk0nsYAFR6reppEWRI3PU3hWN4H2HPHD0lls_ApImRUpysgawAmQH4QmYryPz1jA36NKqdMnwqjMfua0TJCR7EFD8RYywzZ-AY_Tg0WxJ4/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttp-3A__www.jeiglesias.com%26d%3DDwMFAg%26c%3Dlb62iw4YL4RFalcE2hQUQealT9-RXrryqt9KZX2qu2s%26r%3DIujVNinL39oXFTBF1T9Z2Rk1Ua_29BuYuocLBTMwY64%26m%3Dv6DnJ4t8W0RIDuNYnRVL1C1fPzedTXtCVgGnnuu_hkh9dAkD3nTKzFReFukkp_w3%26s%3D6V3m89xQuP3goeB5ZkWv_M1HKJkaEFwXJCBRcAET5bM%26e%3D
On Mar 23, 2022, at 10:41, Alice Tao ajt4002@med.cornell.edu wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I'm attempting to use the mri_segment_hypothalamic_subunits tool on subjects that have been analyzed with recon-all as described on the wiki page (*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/HypothalamicSubunits https://secure-web.cisco.com/1O9nRcqDjOXFZOE2PsG3cr4yvli6DyccMMXsJwVDnbHY6iDBWFCIw0TBZ9PoYv2lnOCkVStFq2n1MQsE852tmIDB4k8MLmQjnkSw7n8tSMRd4gSMpJSbqWfqUViGXA-oHPT3GxEJS1h2kpFcerJcm527rKWxww4S309XOFU07qgP09TiQBEtY7-SiJtnP3AaVeBf6eZnlLnE3FRDwnv9cKYGMgDhPGxU_ZeLu5HPrJ19VYu1yW50apV-uUjfik1Z5rtB9lkOftksb5NAyHWxABEveSYk8Or-6ckfMUyZtEODNaP8O4xfxDHo8MfoFBtv3/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__surfer.nmr.mgh.harvard.edu_fswiki_HypothalamicSubunits%26d%3DDwMFAg%26c%3Dlb62iw4YL4RFalcE2hQUQealT9-RXrryqt9KZX2qu2s%26r%3DIujVNinL39oXFTBF1T9Z2Rk1Ua_29BuYuocLBTMwY64%26m%3Dv6DnJ4t8W0RIDuNYnRVL1C1fPzedTXtCVgGnnuu_hkh9dAkD3nTKzFReFukkp_w3%26s%3DNvuub_YARcy4KGLMuK7jkddI5gkWMygtJGe1bQE10vU%26e%3D), but I received the following error when I run the mri_segment_hypothalamic_subunits command (mri_segment_hypothalamic_subunits--s):
Illegal instruction: 4
Does anyone have any suggestions on how to trouble-shoot this problem? recon-all does not seem to have any issues.
- FreeSurfer version: freesurfer-darwin-macOS-7.2.0-20210713-aa8f76b
- Platform: macOS Monterey, version 12.2.1
Thank you! Alice _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://secure-web.cisco.com/1nb2Mwy3xls17Y3IkwXk54R-pBBBpJd5DglfGe6WkqorNuHvk7yYcUbtGn9UC3ajsSKI1GdeKjUKA6AGW4NTfp9eFXBZ3Vwb09hHHo3WfKaEOesa4yCyNVmAf901fSrGV0eSBXpZ7Hxq1xC5k1GXnuezX1dG61wq66Gru4_H6-9cvJJjLQZ0-5Hq4yexj0VAPvEj6FLiJy6F5aUbSM0MoXdbWAtRjMSgfZBuPogsLm8X_Y1xRg5Tgc_0aEEcrVVVtezoHsBa89YX03Ap0tpM_P3IpeNaChKPW2uzSoRJjJNDMNJvZuQ6uUEJtBgTah8z8/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer%26d%3DDwMFAg%26c%3Dlb62iw4YL4RFalcE2hQUQealT9-RXrryqt9KZX2qu2s%26r%3DIujVNinL39oXFTBF1T9Z2Rk1Ua_29BuYuocLBTMwY64%26m%3Dv6DnJ4t8W0RIDuNYnRVL1C1fPzedTXtCVgGnnuu_hkh9dAkD3nTKzFReFukkp_w3%26s%3DAPqkcYlUmUCiTqlgSUgcMs9ouE3c-hmao7G2nBLKWzg%26e%3D
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