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Hi,
I am curious to know why Freesurfer prefers a T1 weighted scan to a T2 weighted one.
Superficially at least, the T2 scan appears to have as good GM/WM contrast with the added benefit of being able to more easily distinguish CSF from bone.
[image: image.png]
[image: image.png]
The above scans are from ERNIE test subject. The first one is T1 weighted and the second is T2 weighted.
Michael McLaughlin,