Hi Freesurfer folks-
I created a custom aseg atlas and now, I am running into some issues w/ recon-all. Here is part of my terminal output...
--- cp aseg.auto.mgz aseg.mgz
#-------------------------------------- #@# CC Seg Wed May 6 20:40:19 CDT 2009
mri_cc -aseg aseg.auto.mgz -o aseg.auto_CCseg.mgz 162_aseg
reading input aseg from aseg.auto.mgz writing aseg with cc labels to aseg.auto_CCseg.mgz mri_cc: volume /study/eemri/data/proc/freesurfer/162_aseg/mri/aseg.auto.mgz already has CC in it reading aseg from /study/eemri/data/proc/freesurfer/162_aseg/mri/aseg.auto.mgz Linux pasilla.keck.waisman.wisc.edu 2.6.18-128.1.6.el5 #1 SMP Wed Apr 1 07:03:59 EDT 2009 i686 i686 i386 GNU/Linux
recon-all exited with ERRORS at Wed May 6 20:40:22 CDT 2009
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Thoughts? Did my aseg creation go awry?
Best, jamie.