Hi Bruce,
Normally it then starts listening a few lines like FREESURFER_HOME, FSFAST_HOME, FS_OUTPUT_FORMAT etc. Similar to Zeke's terminal here:
https://surfer.nmr.mgh.harvard.edu/fswiki/MacOsInstall#SetupandConfiguration
Afterwards I was able to use FS commands like for instance mri_label2vol, which is not possible now.
Thanks for your help André
________________________________________ Von: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu]" im Auftrag von "Bruce Fischl [fischl@nmr.mgh.harvard.edu] Gesendet: Sonntag, 8. November 2015 17:38 An: Freesurfer support list Betreff: Re: [Freesurfer] cannot start freesurfer from terminal
Hi Andre
what are you expecting to happen? The sourcing just sets a bunch of environment variables and paths - it doesn't start anything
cheers Bruce On Sun, 8 Nov 2015, André Schmidt wrote:
Dear FS experts,
Surprisingly, I am no longer able to start freesurfer from the terminal:
Andres-MacBook-Pro:~ andre$ export FREESURFER_HOME=/Applications/freesurfer Andres-MacBook-Pro:~ andre$ source $FREESURFER_HOME/SetUpFreeSurfer.sh
Do you know what I am doing wrong?
Thank you Andre