Hi Cate,
what was the volume to autorecon1? Does it display properly in tkmedit?
Bruce On Fri, 15 Jun 2007, Catherine Hartley wrote:
Hi,
I just ran autorecon1 on a batch of data and when I view the brainmask in tkmedit, selecting the coronal orientation actually displays the sagittal orienation and vice versa (horizontal is fine). Also, when I check the talairach using tkregister, the talairach comparison volume comes up with a strange diagonal orientation. Some illustrative images are attached.
Any suggestions for how to correct this would be welcome.
Thank you, Cate