Hi Ken
have you identified why it is missing cortex? Is the wm dark-ish (<<110) there? Did the skull stripping remove something? Was the wm.mgz/?h.orig correct?
cheers Bruce
On Mon, 18 May 2020, KennethSPrice wrote:
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Hello Freesurfer Experts!
I am looking for some guidance on improving the pial surface estimation at the right post-central gyrus. Looking at the aparc+aseg file, it is clear that the pial surface estimation missed some cortex. I have already experimented with different -wthresh values.
Thanks, Ken
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