confirm that both T1.mgz and brainmask.auto.mgz a decent images (via tkmedit). if they are good, then the gcut stage can be skipped by adding the -no-gcut flag to the end of the recon-all stream, but i have never seen this particular error occur, so i wonder about the quality of the input. if those two files look fine, and gcut still gets killed (which is odd), then you can send me those files via our file drop and i can try to replicate.
n. On Mon, 2011-01-24 at 15:01 -0500, Michelle Umali wrote:
Dear All, recon-all was killed during mri_gcut.
Here is the error:
mri_gcut -110 -mult brainmask.auto.mgz T1.mgz brainmask.auto.mgz
Killed.
How does one deal with this?
Thanks in advance for any help. Michelle _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer