Hi Freesurfer experts,
I ran the command <trac-all -prep -c dmrirc.txt>
on a bunch of subjects and all of them finished in ~90 minutes except one. This subject keeps on going into a seemingly endless loop. It has been running for almost 12 hours now. A section of the console output is reproduced below.
What is the issue here, and how can this be solved? I am using the dev version on a Linux box.
Thanks in advance for all help. Shantanu
------ SAMPLE CONSOLE OUTPUT ------ INFO: Distances between consecutive points in test subject's space are 11 11 10 10 10 WARN: Could not find satisfactory control point fit - try 1831 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels WARN: Turning off FA check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0283381 INFO: Points where local peeks in curvature occur are 106 105 67 (curv = 0.0284049) 112 108 77 (curv = 0.0450985) 115 108 98 (curv = 0.0526145) 113 104 116 (curv = 0.0460477) 107 103 128 (curv = 0.0759711) INFO: Intermediate dominant points are 103 98 50 112 108 77 114 108 89 115 108 98 107 103 128 105 106 145 INFO: Final dominant points are 103 98 50 112 108 77 114 108 89 115 108 98 107 103 128 105 106 145 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 103 98 50 108 106 69 114 108 89 114 105 108 108 103 126 105 106 145 INFO: Distances between consecutive points are 21 21 19 19 19 INFO: Selected control points in test subject's space are 80 62 23 81 66 31 84 68 40 84 66 48 82 64 56 81 65 64 INFO: Distances between consecutive points in test subject's space are 9 10 8 8 8 WARN: Could not find satisfactory control point fit - try 1832 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels WARN: Turning off FA check for center streamline INFO: Step is 5 voxels