Hi Lars,
it looks like no input subjects are defined.
Bruce On Wed, 27 Jun 2007, Lars M. Rimol wrote:
Hi, Trying to run make_average_subject but getting an error message. Any idea what may be wrong?
Thank you! Lars M. Rimol
make_average_surface --fsgd /space/emc1/3/data/TOP/Analysis_lmr/TOPtest.fsgdf --out /space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest $Id: make_average_surface,v 1.27.2.2 2006/06/09 15:46:28 nicks Exp $ Wed Jun 27 18:06:43 PDT 2007 /space/emc1/3/data/TOP/Analysis_lmr setenv SUBJECTS_DIR /space/emc1/3/data/TOP/Containers output sdir is /space/emc1/3/data/TOP/Containers uid=7266(lmr) gid=7266(lmr) groups=7266(lmr),7450(topproj) context=user_u:system_r:unconfined_t ==================== make_average_surface ==================== input subjects: output subject: /space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest mri_add_xform_to_header -c auto /space/emc1/3/data/TOP/Containers//space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest/mri/mni305.cor.mgz /space/emc1/3/data/TOP/Containers//space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest/mri/mni305.cor.mgz INFO: extension is mgz
#@# Making rh annotation --------------------- Wed Jun 27 18:06:47 PDT 2007 mris_ca_label -ml-annot rh.curvature.buckner40.filled.desikan_killiany.gcs 7 label/rh.aparc.annot /space/emc1/3/data/TOP/Containers/space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest ML Label: rh.curvature.buckner40.filled.desikan_killiany.gcs 7 label/rh.aparc.annot Reading icosahedron /space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R304/lib/bem/ic7.tri Reading gcsa from /space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R304/average/rh.curvature.buckner40.filled.desikan_killiany.gcs reading color table from GCSA file.... average std = 35.0 0.3 using min determinant for regularization = 0.011 0 singular and 829 ill-conditioned covariance matrices regularized Building most likely labels Filtering labels 2 filter iterations complete (2 requested, 376 changed) writing colortable into annotation file... mris_ca_label -ml-annot rh.atlas2005_simple.gcs 7 label/rh.aparc.a2005s.annot /space/emc1/3/data/TOP/Containers/space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest ML Label: rh.atlas2005_simple.gcs 7 label/rh.aparc.a2005s.annot Reading icosahedron /space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R304/lib/bem/ic7.tri Reading gcsa from /space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R304/average/rh.atlas2005_simple.gcs reading color table from GCSA file.... average std = 1.0 0.2 using min determinant for regularization = 0.000 0 singular and 827 ill-conditioned covariance matrices regularized Building most likely labels Filtering labels 2 filter iterations complete (2 requested, 1935 changed) writing colortable into annotation file... #@# Making average rh.orig surface --------------------- Wed Jun 27 18:07:06 PDT 2007 /space/emc1/3/data/TOP/Containers/space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest mris_make_average_surface -i 7 -o orig -sdir-out /space/emc1/3/data/TOP/Containers rh orig_avg sphere.reg/space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest reading vertex positions from orig... mris_make_average_surface [options] hemi outsurfname cansurfname outsubject subj1 subj2 subj3 ... Run with -help for more info