Can you provide the log file when running with the dev version? It really should work when using the dev version.
On 12/08/2016 04:20 PM, William George Henry Collishaw wrote:
Hello Freesurfer Developers,
I'm attempting to run recon-all on Ubuntu 16.04, on failure I am getting the following log:
mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig .mgz --o orig_nu.mgz
Linux jupiter 4.4.0-43-generic #63-Ubuntu SMP Wed Oct 12 13:48:03 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s M87100718 exited with ERRORS at Thu Dec 8 13:48:35 MST 2016
I googled the issue and found recommendations to use the development version of freesurfer OR downgrade Perl from 5.22 to 5.18.
I tried both of these separately and neither worked. I am still getting the same error.
The recon-all.log is attached
freesurfer version used with perl 5.18
- freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
freesurfer version used with perl 5.22 - freesurfer-Linux-centos6_x86_64-dev-20161205-aab1c9c
Thanks, William Collishaw
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