Re: [Freesurfer] Freeview error

Is your work disk full?

On 9/17/19 10:22 AM, Miguel Ángel Rivas Fernández wrote:

External Email - Use Caution

I tried in the command window where I started freeview but nothing happened. This is the output

miguel@miguel-VirtualBox:~$ ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz

El mar., 17 sept. 2019 a las 1:56, Ruopeng Wang (<rpwang@nmr.mgh.harvard.edu mailto:rpwang@nmr.mgh.harvard.edu>) escribió:

Can you run the command in the command window that you start
freeview?

Ruopeng

...

On Sep 16, 2019, at 5:11 PM, Miguel Ángel Rivas Fernández
<miguelrivasfdez@gmail.com <mailto:miguelrivasfdez@gmail.com>> wrote:

        External Email - Use Caution


Dear Ruopeng,

I put that command in the freeview command console and this is
the output

[FreeView] ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz
This is not a shell. Only freeview commands are supported. Type
'-h' for all the available commands.
 Best regards,

El lun., 16 sept. 2019 a las 22:58, Ruopeng Wang
(<rpwang@nmr.mgh.harvard.edu
<mailto:rpwang@nmr.mgh.harvard.edu>>) escribió:

    If you run:

    ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz

    What does it show?

    Ruopeng

    On 9/16/19 4:29 PM, Miguel Ángel Rivas Fernández wrote:

...

            External Email - Use Caution

    Dear Freesurfer devs,

    I tried to open the brainmask.mgz file in freeview but I
    obtained this error:


    mghRead(/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz,
    -1): could not open file
    MRIread failed: Unable to read from
    /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz
    mghRead(/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz,
    -1): could not open file

    Any suggestion about what could be the problem?, maybe the
    write permissons of the freesurfer folder?

    I am using the
    freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
    version that is installed in a Ubuntu 18.04 virtual machine.
    It is very strange because few weeks ago everything it was
    working correctly.

    Thanks in advance.


    Best regards,
    -- 
    *Miguel Ángel Rivas Fernández*

    _______________________________________________
    Freesurfer mailing list
    Freesurfer@nmr.mgh.harvard.edu  <mailto:Freesurfer@nmr.mgh.harvard.edu>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

    _______________________________________________
    Freesurfer mailing list
    Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer



-- 
*Miguel Ángel Rivas Fernández*
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- *Miguel Ángel Rivas Fernández*

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer