Hi@all,
I have a dataset of several MRI T1 images and one Flair. All images of the same subject and were taken in the same session. My goal is to register and segment all those MRI images.
*= A =* In my first try I have used, "recon-all -i image1 -i image2 etc'" for all T1 images (here, I didn't use the Flair images ) . Follow this, I used the " recon-all -all" command. (For about two days...)
Here come Question 1: After all this process, I didn't completely follow the results I got... As I have noticed that I have only one segmentation file (aparc.a2009s+aseg.mgz) ? How can I see the segmentation result with tkmedit in the different brain images ?
*= B =* As I would like the neuroanatomical labels to be inspected for accuracy by a physician. My physician asks to see the segmentation result on top of the Flair images (saying it easier for him to do so on Flair images) So I've used the "recon-all -i image1 -i image2 etc'" command again but this time I've also included the Flair image.
Here come Question 2: However, this time, unfortunately, the "recon-all -iimage1 - i image2 etc'" , failed, saying that: ~~~~~ images have different voxel sizes. Currently not supported, maybe first make conform? Debug info: size(1) = 0.5078, 0.5078, 5.5 size(0) = 0.51, 0.51, 5.5 ~~~~~ Is there something I can do to fix this ?
Thanks for everyone involved in this great project! Highly appreciate your time and efforts.
Best,
Spanier