Hello All,
I have a library problem when I run recon-all. Recon-all exits with ERROR during the cortribbon step. I am using FC8 x86_64 OS on an Intel Xeon 64 bit machine. I have installed CentOS4-x86_64-v4.0.2 version of freesurfer. The library in question "libexpat.so.0" has been installed and is located in /usr/lib however, the problem persists. The command and error is:
recon-all -s 24560 -cortribbon
INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects Actual FREESURFER_HOME /usr/local/freesurfer
-rw-r--r-- 1 giang users 698777 Apr 1 11:29 /usr/local/freesurfer/subjects/24560/scripts/recon-all.log
Linux snood.wpic.upmc.edu 2.6.24.3-12.fc8 #1 SMP Tue Feb 26 14:21:30 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
INFO: current FREESURFER_HOME does not match that of previous processing.
Current: /usr/local/freesurfer
Previous: /Applications/freesurfer
#--------------------------------------------
#@# Cortical ribbon mask Tue Apr 1 14:24:12 EDT 2008 /usr/local/freesurfer/subjects/24560/mri
mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon --save_distance 24560
mris_volmask.bin: error while loading shared libraries: libexpat.so.0: cannot open shared object file: No such file or directory Linux snood.wpic.upmc.edu 2.6.24.3-12.fc8 #1 SMP Tue Feb 26 14:21:30 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Tue Apr 1 14:24:12 EDT 2008
Any help is greatly appreciated.
Thank you,
Dhruman
PS: Sorry if you received the email twice.