Re: [Freesurfer] remove label from aseg

If you want to remove them, you can use mri_binarize with the --replace option, replacing them with whatever you want.

On 10/21/2015 04:38 PM, Jacobs H (NP) wrote:

Hi,

I am trying to generate a segmentation file containing the aseg+aparc but replacing the hippocampus with the hippocampal subfields. With mergeseg I was able to merge the segmentations, but unfortunately parts of the “old” hippocampus (labeled as 17 and 53) are still in there (as the area covered by the subfields is not 100% equal to the hippocampus of the aseg). How can I remove the remains of the old hippocampal labels?

Many thanks! Best Heidi

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer