24 Oct
2022
24 Oct
'22
4:32 p.m.
External Email - Use Caution
Greetings,
I am running recon-all as per the iElvis pipeline with: recon-all -s <id> -i $SUBJECTS_DIR/.../T1.nii -all -localGI And followed by ct2mri
My questions are: 1. What is the actual output "space" of the resulting T1.nii and postInPre.nii ? Does recon-all do keep everything in patient space, or does it register them to fsaverage space automatically? If so, how would I convert these MRIs and CTs to MNI305 space?
Thank you very much.
Andrew