Use the official FreeSurfer distribution for Virtualbox
-- Enviado do meu celular Nokia E71 -----Msg original----- De: Giacomo Mandruzzato Enviado: 26/09/2009 08:22:55 Para: freesurfer@nmr.mgh.harvard.edu Assunto: [Freesurfer] problem display tksurfer in vmware
Hi, I'm Giacomo Mandruzzato, a student of Bioengineering at Padova (DIE) and I'm working on my Thesis with Freesurfer (last version). I am using a virtual machine Vmware 2.5.3 with Cent0S 5.1 running FSL virtual disk in Windows Vista Home premium, I installed freesurfer and tkmedit e qdec run correctly but when run tksurfer (i.e. tksurfer bert rh pial, like website suggests) display an error :
[root@localhost ~]# tksurfer bert rh pial surfer: current subjects dir: /usr/local/freesurfer/subjects surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to:
surfer: /root surfer: all rgb files written to /root surfer: Reading header info from /usr/local/freesurfer/
subjects/bert/mri/T1.mgz
surfer: vertices=131860, faces=263716
WARNING: No colortable found!
surfer: single buffered window surfer: tkoInitWindow(bert) surfer: using interface /usr/local/freesurfer/lib/tcl/tksurfer.tcl Reading /usr/local/freesurfer/lib/tcl/tkm_common.tcl Reading /usr/local/freesurfer/lib/tcl/tkm_wrappers.tcl
Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl Reading /usr/local/freesurfer/lib/tcl/tkUtils.tcl Successfully parsed tksurfer.tcl reading white matter vertex locations... %
Tksurfer open and I can see only a little piece of brain. I have update the video card's driver and I tried to use another vm, like VirtualBox but I left the idea because I found some problem with boot of it. I have found a similar problem in internet, but without solution: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg07389.html (I am not using a Nvidia video card).
characteristic of my notebook: Olidata , Intel core duo T2450 @ 2 x 2.00 Ghz, Ram 2 GB, Windows Vista Home Premium 32bit SP2 updated. Video card: Mobile Intel 945 Express Chipset Family
I apologize for bad English and little knowledge of Unix OS. Please, if somebody can help I am grateful.
Best Regards,
Giacomo Mandruzzato giacomo.mandru@gmail.com