Hi Adriana,
I don't seem to see your previous message posted. Can you share the images again, and recon-all.log too?
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of adriana.jorge@unibe.ch Sent: Monday, January 30, 2023 7:50 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Fw: error: Numerical argument out of domain; error: MRIhistogramLabelRegion: constant image\00
External Email - Use Caution
Hello,
I'm just checking to see if you have received the images and if you are still working on my issue? I don't think I got any more replies from you and just want to make sure if you're still working on it.
Best,
Adriana
________________________________ From: Jorge, Adriana (ARTORG) Sent: Friday, January 13, 2023 12:16:19 PM To: Freesurfer support list Subject: Re: [Freesurfer] Fw: error: Numerical argument out of domain; error: MRIhistogramLabelRegion: constant image\00
Hello,
Yes, of course. I trust you won't share the images, please.
Best,
Adriana
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Huang, Yujing <YHUANG43@MGH.HARVARD.EDUmailto:YHUANG43@MGH.HARVARD.EDU> Sent: Wednesday, January 11, 2023 3:50:39 PM To: Freesurfer support list Subject: Re: [Freesurfer] Fw: error: Numerical argument out of domain; error: MRIhistogramLabelRegion: constant image\00
Hi Adriana,
Is it possible for you to share the T1 and T2 images so we can debug it?
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of adriana.jorge@unibe.chmailto:adriana.jorge@unibe.ch Sent: Tuesday, January 10, 2023 8:53 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Fw: error: Numerical argument out of domain; error: MRIhistogramLabelRegion: constant image\00
External Email - Use Caution Hi FreeSurfer Developers,
I'm trying to obtain brain parcellations/segmentations of a subject's brain, using T1 and T2 images, but when I execute the recon-all command, I get the following error message:
error: Numerical argument out of domain error: MRIhistogramLabelRegion: constant image error: Numerical argument out of domain error: MRIhistogramLabelRegion: constant image Segmentation fault Linux sharky 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 GNU/Linux
recon-all -s Test_withT2 exited with ERRORS at Tue Jan 10 13:17:00 CET 2023
The FreeSurfer version I'm currently using is the freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275, but I have also tried the exact same process (same command and same data) in the freesurfer-linux-ubuntu18_x86_64-7.3.0-20220718-7725d89 version and got the exact same error message. When I tried running the recon-all again with the freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b version, no error was reported and the recon-all outputs were correct. Recon-all works for versions reesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 and freesurfer-linux-ubuntu18_x86_64-7.3.0-20220718-7725d89 if I use only the T1 image. The recon-all logs for the 2 failed and the 1 successful attempts are attached here. Can you help me figure out what the issue is? Why can't I run the recon-all using both T1 and T2 in the latest versions?
Best, Adriana Jorge