Hi Doug
Thanks for the information. Could you however upload it again as the files are unavailable atm? Due to congresses and holiday, I was not able to download it in time.
Thank you in advance and sorry for the incovenience,
Greetings
Robby
On 05/07/16 19:17, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N Greve" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of greve@nmr.mgh.harvard.edu> wrote:
You can use the version 6 mri_glmfit which you can get from here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_glmfit
On 06/16/2016 07:51 AM, Robby De Pauw wrote: > > Dear FreeSurfer users > > I am not able to extract the Z-values as they are not present in my > output: > > z.mgh -- z-stat that corresponds to the significance > > Are these Z-values always produced (or only in case of two group > comparison)? Is there a way to produce this map myself? > > This is my output after fitting the model (mri_glmfit) and after > clusterwise correction for MC: > > C.dat cache.th13.abs.sig.voxel.mgh > > F.asc cache.th13.abs.y.ocn.dat > > F.csv cnr.mgh > > F.mgh gamma.mgh > > cache.th13.abs.pdf.dat gammavar.mgh > > cache.th13.abs.sig.cluster.mgh maxvox.dat > > cache.th13.abs.sig.cluster.summary sig.asc > > cache.th13.abs.sig.masked.mgh sig.csv > > cache.th13.abs.sig.ocn.annot sig.mgh > > cache.th13.abs.sig.ocn.mgh > > I am currently working on the latest version of FreeSurfer: > > freesurfer-Darwin-lion-stable-pub-v5.3.0 > > Thank you for your response, > > Greetings > > Robby > > Robby De Pauw, PT, MT, drs. > > *T *+32 09 332 12 19* | Email *Robby.DePauw@Ugent.be > mailto:Robby.DePauw@ugent.be > > Ghent University *| *Rehabilitation Sciences and Physiotherapy > > Campus Heymans 3B3 (022) > > De Pintelaan 185 BE-9000 Ghent > > Route to my office https://soleway.ugent.be/routes/1090 > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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