Hi Liesbeth
if it's the eTIV you are looking at, that is computed from the determinant of the Talairach transform and is independent of the skull stripping.
cheers Bruce
On Fri, 7 Jan 2011 L.Hoekstra@psy.umcn.nl wrote:
Dear Freesurfer users,
We were suprised to find out in two cases that after adjusting watershed (because of skull that was left) and autorecon2 and autorecon3, the ICV was exactly the same as the ICV measured by pipeline--> autorecon-all. If we didn't adjust watershed in one case the skull was included in the pial.
Did we had to rerun autorecon 1 after adjusting watershed to get the skull out of the ICV measure?
thx, Liesbeth Hoekstra
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