External Email - Use Caution
From: Timothy Coalson tsc5yc@mst.edu Reply-To: Timothy Coalson tsc5yc@mst.edu Date: Thursday, May 7, 2020 at 2:30 PM To: "Glasser, Matthew" glasserm@wustl.edu Cc: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)
The way to map data between freesurfer and fs_LR is in faq #9:
https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ#HCPUsersFA...
I seem to recall that the colors in the colored version of our MMP atlas ended up unique (at least within the hemisphere), so that should remove one hurdle from converting to freesurfer format.
Tim
On Thu, May 7, 2020 at 10:01 AM Glasser, Matthew <glasserm@wustl.edumailto:glasserm@wustl.edu> wrote: That is our multi-modal parcellation. Tim has some instructions to get data from the fs_LR mesh to fsaverage in GIFTI format. Doug perhaps you can say how to convert from GIFTI to annot?
Matt.
From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of "Douglas N. Greve" <dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Thursday, May 7, 2020 at 9:59 AM To: "freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz)
* External Email - Caution * what's hcpmmp1? On 5/7/2020 4:46 AM, pooja prabhu wrote:
External Email - Use Caution Hai list, Can I get some insight on how to convert HCPMMP1 to aseg(provided we have annotation files) for fsaverage brain? For example: for aparc parcellation we use aparc2aseg and get aparc+aseg.mgz. Similarly I need for HCPMMP1. Can someone help me with this? Thank you
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