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/usr/local/freesurfer/stable5_3_0/bin/freesurfer
On Wed, Jun 6, 2018 at 12:23 AM, Douglas Greve dgreve@mgh.harvard.edu wrote:
what version of fs are you running?
On 6/5/18 10:02 PM, Jiahe Zhang wrote:
External Email - Use CautionI tried both below and got the same error. setenv TMPDIR $my_tmp_dir setenv tmpdir $my_tmp_dir
Is doesn't seems like selxavg3-sess reads this env variable. Or am I missing something?
On Mon, Jun 4, 2018 at 5:56 PM, Douglas N. Greve dgreve@mgh.harvard.edu wrote:
set the TMPDIR env variable to point anywhere you want
On 06/04/2018 02:57 PM, Jiahe Zhang wrote:
External Email - Use CautionDear Freesurfer experts,
While running selxavg3-sess on a large functional scan (7 Tesla, 768 time points), I got these errors
gzip: stdout: No space left on device ERROR: /tmp/tmp8187256.nii, read in 1669519272 voxels, expected
3257077248
It sounds like there wasn't enough space on /tmp for an intermediate file to be written. Is there any way I can override the default so the intermediate file gets written to a location that does have enough storage space?
Thanks, Jiahe
-- Jiahe Zhang Ph.D. Candidate Department of Psychology Northeastern University 617-373-2649
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-- Jiahe Zhang Ph.D. Candidate Department of Psychology Northeastern University 617-373-2649
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.