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Dear All,
I am running into errors using the infant freesurfer tool. Specifically, the error I am getting now is this:
Traceback (most recent call last):
File "/Applications/freesurfer/infantFreesurfer/python/scripts/sscnn_skullstrip", line 74, in <module>
cor_img_data = predict('cor')
File "/Applications/freesurfer/infantFreesurfer/python/scripts/sscnn_skullstrip", line 64, in predict
wmp_standardize=False
File "/Applications/freesurfer/infantFreesurfer/python/packages/sscnn_skullstripping/deeplearn_utils/DeepImageSynth.py", line 261, in from_file
model = load_model(model_filename, custom_objects={'dice_coef_loss2': dice_coef_loss2})
File "/Applications/freesurfer/infantFreesurfer/python/lib/python3.6/site-packages/keras/engine/saving.py", line 259, in load_model
model_config = json.loads(model_config.decode('utf-8'))
AttributeError: 'str' object has no attribute 'decode'
Maybe the skull stripping is failing because of the shoulders in the image?
[image: Screen Shot 2021-08-18 at 12.01.46 PM.png]
