Hi Doub,
When I ran
recon-all -stage1 -subjid ID
I got the following error. Would someone give me any suggestion? It complains about Stratup.pm at the beginning and later it complains it can't locate the file??????
Any comment would be appreciated ==================================================== ............................ perl: warning: Falling back to the standard locale ("C"). defined(@array) is deprecated at /usr/local/mni/lib/mni_autoreg/Startup.pm line 231. (Maybe you should just omit the defined()?) -------------------------------------------- mri_add_xform_to_header /home/nam/blobby/mri/transforms/talairach.xfm /home/nam/blobby/mri/orig /home/nam/blobby/mri/orig Tue Nov 2 14:57:47 EST 2004 --------------------------------------------- Nu Intensity Correction Tue Nov 2 14:57:48 EST 2004 mri_convert orig nu/nu0.mnc mri_convert orig nu/nu0.mnc reading from orig... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to nu/nu0.mnc... nu_correct -clobber nu/nu0.mnc nu/nu1.mnc perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LANG = "eng_US" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). Can't locate MNI/Startup.pm in @INC (@INC contains: /usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0 /usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0 .) at /usr/local/mni/bin/nu_correct line 37. BEGIN failed--compilation aborted at /usr/local/mni/bin/nu_correct line 37.ERROR: nu_correct ------------------------------------------ Filesystem 1K-blocks Used Available Use% Mounted on /dev/hda6 10080488 7703596 1864824 81% / ------------------------------------------ recon-all exited with errors at Tue Nov 2 14:57:57 EST 2004 ===================================================