External Email - Use Caution
Hi,
I’m trying to run FreeSurfer (v. 7.2.0) longitudinally, first creating the base template for my sample subject across both timepoints, using: recon-all -base sub_01-tp sub-01_ses-01_t1 -tp sub-01_ses-02_t1 -all
Both cross-sectional timepoints were previously run separately. Just after ‘mri_pretess’ finishes, I encounter the error: “FREESURFER: Undefined variable”.
I’m running FreeSurfer on my organization’s HPC, and I’ve ensured that SUBJECTS_DIR and FREESURFER_HOME are both set appropriately.
I found another post with the same error, but they also had “nu_correct: Command not found”, unlike me. Both of us are using v. 7.2.0. https://secure-web.cisco.com/1KfETP9AssoehTvJ3VhjCNZJJg3rReFE0UsHzbxBF1de4xG...
Can’t figure this one out. Thanks all!
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