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Dear all, I unsuccessfully tried to run the NextBrain segmentation tool. Could you help me, please? My machine has freesurfer 8.0 installed - usually all look fine. After typing the command suggested in the nextbrain page, I have this error message
vittorio@Disordini-Movimento-1 ~ % export FREESURFER_HOME=/Applications/freesurfer/8.0.0
source $FREESURFER_HOME/SetUpFreeSurfer.sh
-------- freesurfer-macOS-darwin_arm64-8.0.0-20250205-0f2bd3a --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applications/freesurfer/8.0.0
FSFAST_HOME /Applications/freesurfer/8.0.0/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /Applications/freesurfer/8.0.0/subjects
MNI_DIR /Applications/freesurfer/8.0.0/mni
vittorio@Disordini-Movimento-1 ~ % which mri_histo_atlas_segment_fireants
/Applications/freesurfer/8.0.0/bin/mri_histo_atlas_segment_fireants
vittorio@Disordini-Movimento-1 ~ % which mri_histo_atlas_segment_fireants
/Applications/freesurfer/8.0.0/bin/mri_histo_atlas_segment_fireants
vittorio@Disordini-Movimento-1 ~ % mri_histo_atlas_segment_fireants \
--i /Users/vittorio/Documents/Vittorio/prova_nextbrain/T1.nii.gz \
--o /Users/vittorio/Documents/Vittorio/prova_nextbrain/output_prova_nextbrain \ --device cpu \
--side left \
--mode invivo \
--threads 20
Incorrect number of arguments.
Usage:
mri_histo_atlas_segment_fireants INPUT_SCAN OUTPUT_DIRECTORY GPU THREADS [BF_MODE]
Or, for help
mri_histo_atlas_segment_fireants --help
vittorio@Disordini-Movimento-1 ~ %
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Do you have any suggestions to solve the issue?
Best wishes
Vittorio