Hi Hang have you looked at the talairach transform? If it is accurate you can just tell recon-all to ignore it. If it is not, maybe you can run the SPM bias correction later in the stream? cheers Bruce
On Mon, 23 Sep 2019, Hang Zeng wrote:
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[icon_10_generic_list.png] mT1.nii[IMAGE] Dear Freesurfer users,I am trying to run the recon-all command for a T1 imge. The image is bias corrected using spm-segmentation (see attached). And the Talarich Failure Dection error occurred (see the log file).
I ran the same analysis with the non-processed T1 and it worked. Any information would be appreciated
Best, -- Hang ZENG Institute of Neuroscience and Medicine (INM-3) Forschungszentrum Juelich, Leo-Brandt-Str. 5 52425 Juelich Email: h.zeng@fz-juelich.de & zenghang14@gmail.com Telefon: +49 2461/61-85328